Many jobs in parallel¶
import multiprocessing
# Run as many job simultaneously as there are cpu on the system:
maxjobs = multiprocessing.cpu_count()
print('Running up to {} jobs in parallel simultaneously'.format(maxjobs))
# Set the default jobrunner to be parallel:
config.default_jobrunner = JobRunner(parallel=True, maxjobs=maxjobs)
# Number of cores for each job:
config.job.runscript.nproc = 1
# Load all molecules in the folder 'molecules':
molecules = read_molecules('molecules')
settings = Settings()
settings.input.ams.Task = 'GeometryOptimization'
settings.input.dftb.Model = 'GFN1-xTB'
results = []
for name, molecule in sorted(molecules.items()):
job = AMSJob(molecule=molecule, settings=settings, name=name)
results.append(job.run())
# Only print the results of the succesful caluclations:
for result in [r for r in results if r.ok()]:
print('Energy for {:<12}: {:>10.3f} kcal/mol'.format(result.name, result.get_energy(unit='kcal/mol')))
Note
To execute this PLAMS script:
Download ManyJobsInParallel.py
Download molecules.tar
and extract it$AMSBIN/plams ManyJobsInParallel.py
Output
[09:42:34] PLAMS working folder: /scratch/rundir.plams.ManyJobsInParallel/plams_workdir
Running up to 8 jobs in parallel simultaneously
[09:42:34] JOB Acetic_acid STARTED
[09:42:34] JOB Benzene STARTED
[09:42:34] JOB Acetic_acid RUNNING
[09:42:34] JOB Butane STARTED
[09:42:34] JOB Ethane STARTED
[09:42:34] JOB Benzene RUNNING
...
...
[09:42:35] JOB Butane FINISHED
[09:42:35] JOB Butane SUCCESSFUL
[09:42:35] JOB Benzene FINISHED
[09:42:35] JOB Benzene SUCCESSFUL
Energy for Acetic_acid : -9913.297 kcal/mol
Energy for Benzene : -12039.485 kcal/mol
Energy for Butane : -8699.182 kcal/mol
Energy for Ethane : -4686.355 kcal/mol
Energy for Ethanol : -7629.287 kcal/mol
Energy for Formic_acid : -7890.662 kcal/mol
Energy for Methanol : -5621.724 kcal/mol
Energy for Water : -3618.401 kcal/mol
[09:42:35] PLAMS run finished. Goodbye
Test duration in seconds: 1